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They've also found that these genes are expressed in two groups of about 100 neurons each, the ventral lateral neurons (LNV) and the dorsal lateral neurons (LND).
To select genes that are differentially expressed in two groups of tissues, we used the class comparison tool in BRB ArrayTools (v 3.6; Biometrics Research Branch, National Cancer Institute, MD, USA) to perform multiple comparisons of t-statistics with estimation of false discovery rate (FDR).
In this setting it is possible that a gene that does not appear differentially expressed in two groups can still contribute useful information by combination with other genes.
Among the different genes between NATs and GC, nine genes were reversely expressed in two groups (Table 4), including ATP4B, ATP4A, CCKBR, KCNJ16, SIAT1, DUOX1, WDR37 and APOBEC2.
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To select genes that are differentially expressed in two given groups of tissues, we used significance analysis of microarrays30 as a method for two-sample t-test with the estimation of false discovery rate.
Later on, it was shown that bla OXY-1 and bla OXY-2 genes are expressed in two genetic K. oxytoca groups, namely K. oxytoca strain SG266 and SG271, respectively [ 25].
In the present analysis, 521 transcripts were differentially expressed in at least one species, and 113 transcripts were differentially expressed in two or more species in Group 1, also studied by Sen Sarma et al. [ 21] (Additional file 2).
a Hierarchical cluster diagram represents expression patterns of DEG that specifically expressed in four different comparison groups.
HSP60 may also be differentially expressed in these two groups (median relative expression for Group A: 1.45 and for Group B: 1.23, P=0.077).
Twenty six spots were found differently expressed in the two groups of patients (Table 2 for the top 12 spots; the whole spot informations can be seen in Online Additional file 1: Table S1) (student- t test, p ≤ 0.05).
ER+ and ER− cell lines formed two distinct, stable clusters, and 1,873 genes were differentially expressed in the two groups.
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