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In patient cells, 5723 genes (57% of the total expressed) were differentially expressed compared with control cells (P<0.01, corrected for multiple testing).
qPCR analysis of mouse skeletal muscle RNA performed after intra-peritoneal LPS injection revealed that the SELP (P-selectin) transcript was significantly differentially expressed compared with control (Fig 1a).
Wild-type cells carrying Sch92D3E grew more poorly on rapamycin plates when Sch92D3E was expressed compared with control vector, although the significance of this growth defect is currently unknown.
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The cytokeratin 5/6 was suggested as the best marker for differentiating lung squamous carcinoma and lung adenocarcinoma, although GPC3 and others were also differentially expressed compared with controls.
Similarly, in ami-13.3 roots, six genes were differentially expressed compared with empty-vector control plants in the absence of stress, of which five genes were affected by salt stress in the control plants.
An increasing number of miRNAs were differentially expressed compared with vehicle treated control animals as the study progressed.
For amoxicillin tolerant B. burgdorferi peristers, a total of 516 genes were differentially expressed compared with drug free control, with 342 genes being upregulated and 174 genes down-regulated.
In heart failure, FOXO3a effectors, BNIP3 and MurF-1 are highly expressed compared with age-matched controls.
In the spinal cord of 19-month-old Gdap1−/− mice, equal amounts of GDAP1L1 were expressed compared with age-matched controls (Fig. 7A and B).
We found that HIV infected individuals showed a significantly higher percentage of CD4+ T cells that expressed FOXP3 compared with control individuals.
For each data set, we identify differentially expressed genes compared with control.
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