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These analyses have identified genes that express specifically in PMA, MA, SCP and TPA.
Further, these transcriptomes have been compared with the transcriptomes of 10 stages of rice vegetative and seed development to identify genes that express specifically during anther development.
Subsequent expression analysis identified a number of genes that appear to be expressed exclusively or at very high levels in phloem tissue, including genes that are known to express specifically in the phloem as well as novel phloem genes.
GhAOX1 is a key gene involved in the production of active oxygen species (AOS) in plants [ 40, 41] and hsr203J and hin1 are marker genes for HR which express specifically in plant tissues undergoing HRs [ 42, 43].
In particular, zebrafish A11-type dopaminergic neurons (homologous to mammals), the major far-projecting dopaminergic neurons in this teleost, are located in the ventral diencephalic (hypothalamus) and posterior tuberculum and express specifically the transcription factor Otp [ 75, 77].
However, because of the lack of comparison with other tissue/cell-types most of these studies fall short of identifying genes that express specifically in these cell types and, therefore, would almost certainly be playing significant regulatory roles in controlling various aspects that are unique to male gametophyte development.
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The first plant peroxidase gene, SSP (stigma-specific peroxidase), expressed specifically in stigma papillae was identified in S. squalidus[ 54].
Because they inhabit specific niches within the GI tract, genes expressed specifically within them have a unique expression pattern.
While Tex19.1 is expressed specifically in germ cells, Tex19.2 expression is restricted to testicular somatic cells [16].
Furthermore, the expression of most ncRNAs is ubiquitous, but piRNAs are expressed specifically in germ cells [ 17].
Tae-miR021b was expressed specifically in germinating seed embryos, showing strong concordance with the expression profile obtained through Illumina sequencing.
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