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In addition, we found that silkworm has species-specific SP and SPH genes, and combining the results of express profiles, we hypothesize that members of the silkworm SP and SPH families may participate in biological processes that include digestion, development and the immune response.
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Although minor loss of detail is imminent, discarding multi-mapped reads for expression counts has shown overall reliability in depiction of highly expressed profiles from RNA-seq data [ 45, 48].
To search for any potential clinical correlation with those marker expressing profiles, pathology data of each patient was obtained from NTU Hospital (Table 4) and analyzed by statistics.
However, the analysis of differentially expressed profiles suggested that 62.06% of mRNAs and 66.49% of lncRNAs were downregulated.
The general differential expressed profiles in the three interactions are presented in Figure 4 and Additional file 10: Tables S7-S9.
In this study, proteins showing differentially expressed profiles in the resistant and susceptible cultivars with A. flavus infection under drought stress were identified by using a proteomic approach.
In Drosophila ABCH proteins, Dermauw et al.[ 10] summarized differentially expressed profiles of the CG9990 gene in different tissues and its potential role in survival using an RNAi-aided gene silencing screening method.
With the help of effective priors to model the periodically expressed profiles apart from the monotonic trends, the algorithm produced an optimal clustering of 2000 fission yeast genes into 31 disjoint clusters.
As shown in Figure 2, for both datasets, SSIM and MATISSE yielded modules with similar levels of expression homogeneity and topological connectivity while ICMg produced modules composed of densely connected genes with poorly co-expressed profiles.
To clarify a global overview of the gene expressing profiles in developing SASK, a total of five cDNA libraries were constructed from different developing SASK RNA samples and were respectively sequenced by the Illumina transcriptome sequence.
Proteomic methodologies for differentially expressed profiles of tissue proteins from the midpalatal sutures of a ME group and a control group may provide clues about the biological functions of these proteins during ME.
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