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Care was taken to identify 4R and 3R-paralogues that might be annotated with the same ID by exploring the alignment of the sister contigs.
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Gaps and misalignment between the genome maps and the in silico maps generated from the nucleotide sequence of each candidate chromosome were identified by exploring the alignments of these regions with the corresponding reference assembled molecules generated with up to three different software programs (i.e., CLC Genomics, LaserGene or Geneious).
To visualize the results, Show the Left model from the Object Tree and explore the alignment.
Further we explore the alignment between the TTF and network externalities and its impact on CRM adoption.
As described above, we followed both a "multiple analysis" [ 33] as well as an exclusion strategy to explore the alignment-dependency of the phylogenetic results.
As a foundation, the ML framework is built for two categories of iterative optimization techniques (i.e. deterministic and stochastic) capable of exploring the sequence alignment space.
Under this perspective the paper explores the required alignment of Integrated Water resources planning and Public investment systems.
The findings can be used to explore the possible alignment between scaffolding and learning behaviors, and the mechanism of fading for inquiry-based learning in CBLEs.
It is apparent that future efforts in reconstructing the phylogeny of planktonic or other foraminifera with large divergences in SSU rDNA sequences should focus on exploring the effect of distinct alignments on the phylogenetic signal from the SSU rDNA without prior subjective filtering of the data.
The conserved sites could be explored through the "Alignment View" visualized using Jalview [ 22].
The overall goal was to explore whether the alignment technique could help in validating, or detecting the flaws of, the clustering results.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com