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In addition, to explore the conservation of mini-proteins in all phyla we also carried out BLASTP searches using mini-proteins queries from a representative species for every genus against all mini-protein data with parameters as previously described.
The comparative utility enables users to explore the conservation of known and predicted miRNAs among plant species in integrative views.
Only lineage-specific repeat copies were considered to explore the conservation of mutation rate between human and mouse orthologs.
Again, we restricted our analysis to genes containing at least 40 repeat copies within their introns, where lineage specificity was requested to explore the conservation of substitutional asymmetries.
To explore the conservation of the region that spans [−500, +500] while avoiding the influence of the ORF, genes possessing 3′ UTRs shorter than 500 nt or regions overlapping with the ORF were dropped from the analysis.
To further explore the conservation of the human and tammar WNT4 promoter, we compared minimal promoter sequences (defined with scanning deletion analyses of WNT4 promoters below) with the GenoMatix program DiAlign TF (Multiple Alignment plus Transcription Factor Sites).
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To explore the conservations of the conformations of Rabex-5CC and Rabaptin-5C21 and the interactions between Rabex-5CC and Rabaptin-5C21, we also determined the crystal structures of Rabex-5CC alone at 2.00 Å resolution and in complex with Rabaptin-5C212 at 2.20 Å resolution (Table 1).
Here, we explored the conservation of the TRAPPII-specific subunits.
Prior to any class discussion on T3SSs, students explored the conservation of the LEE genes as part of the E. coli module.
Nevertheless, further comparative study needs to be carried out in the future to explore the conservation pattern of IPACs in plants when more poly(A) site data are available.
These findings suggest an interrelationship between two distinct cysteine degradation systems via a common transcriptional regulator CcdR/DecR/YbaO among bacteria, which motivated us to explore the conservation and variation of these systems among bacteria (see Fig. 4a for a summary of the main components).
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