Exact(4)
The mDC method was applied to protein protein interactions to illustrate the importance of explicit polarization in protein binding.
The explicit polarization model used distributed anisotropic dipole dipole polarizabilities calculated using the Williams Stone Misquitta (WSM) scheme, as implemented in the CamCASP suite of programs.
Given that MNDO/MM and mDC both explicitly treat electronic polarizability and both correlate better than the nonpolarizable GAFF, it is reasonable to suspect that this difference is due to explicit polarization.
A new strategy called explicit polarization (X-Pol) has been developed to construct the potential energy surface and wave functions for macromolecular and liquid-phase simulations on the basis of quantum mechanics rather than only using quantum mechanical results to fit analytic force fields.
Similar(56)
This Account presents one especially promising fragment method, namely, the explicit-polarization method (X-Pol), for the construction of a next-generation force field on the basis of quantum mechanics.
Nonetheless, fixed-charge force fields may overestimate the binding energies due to "pre-polarization" of their charges to account for their lack of an explicit treatment for polarization.
QMFFs have the advantage of including a multipolar description of electrostatic interactions as well as explicit many-body polarization.
For the diffusion layer configuration, and explicit expression for the polarization curve is computed for a system with arbitrary charge numbers and a more general form of the Butler-Volmer law.
The significance of the polarization effect in the explicit charge-transfer systems is under investigation.
A charge locating inside the cylinder cavity, where ion channel proteins and ions are given explicit atomistic representations, will be influenced by the polarization field of the surrounding implicit dielectric/electrolyte medium.
Partisan polarization on this issue is unsurprising, given the explicit Republican sponsorship of a bill to repeal and replace the highest profile achievement of the outgoing Democratic president.
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