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These data were then analysed using an advanced Bayesian Spatially Explicit Capture Recapture model.
Our method allows for the explicit capture of the effects of multiple mutations.
They specifically consider alignments without explicit capture of insertions or deletions.
The use of conventional MR estimates for density estimation therefore tends to be a distant second choice, but is presented here because it provides a logical building block leading to the next method, spatially explicit capture recapture.
The recent development of spatially explicit capture recapture (SECR; Efford, 2004; Borchers & Efford, 2008; Royle & Young, 2008) was motivated by two key issues in MR: (i) unmodelled heterogeneity in detected animals (i.e. not all animals have the same probability of being detected), and (ii) an ill-defined population (i.e. the surveyed area is defined ad hoc in MR).
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We established a large-scale field camera-trapping network to estimate tiger density, survival and recruitment in the Hunchun Nature Reserve and the surrounding area using an open population spatially explicit capture-recapture model.
Therefore, we carried out molecular analyses of DNA contained in non-invasively collected genetic samples to assess the tiger population in the Bangladesh Sundarbans within a spatially explicit capture-recapture (SECR) framework.
We used a Spatially Explicit Capture-Recapture (SECR) model to estimate density, and Generalized Linear (Mixed) Models (GLM/GLMM) to test the effects of habitat type and understory composition and structure on mammal density.
Using camera-traps, we identified 6 individual leopards and used spatially explicit capture-recapture (SECR) methods, incorporating humans and prey as covariates, to test for factors affecting the detection probability of leopards before and after the park closure.
Architecture decisions are often not explicitly documented in practice, even though explicit capturing and documentation of architecture decisions has been associated with a multitude of benefits.
Primary among these are methods based on distance sampling and spatially explicit capture-recapture.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com