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Model-based methods use an explicit admixture model of how the population sample was formed from its ancestral populations.
As for mtDNA, we used an explicit admixture model to infer the relative contributions of different African regions to the sampled southwestern Angola Y-chromosome pool.
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To complement the study of matching patterns, we used an explicit model of admixture [ 41] in which the southwestern Angolan population was considered to be a hybrid containing variable contributions from five different parental regions and populations (Table 2): West Africa, West-Central Africa, East Africa, Pygmies and the southern Africa Khoe-San (see Additional file 4).
The results of the spatially explicit analysis conducted in tess were very similar for the two admixture models used.
To test how much is gained by explicit modeling of correlations among SNPs induced by segments of recent shared ancestry (admixture LD), we also inferred the recent ancestry location using a naïve model that assumes all SNPs to be independent (as in Yang et al. 2012).
We also used individual-based temporally explicit simulations based on realistic demographic and stocking data to predict the extent of admixture.
Ancient Admixture in Human History.
Perhaps an admixture of the two?
Supplementary Figure 4 ADMIXTURE results.
Or an admixture of the two.
It was quite explicit.
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