Results were used in to identify codons most enriched in the evolution, and thus most critical for explaining expression.
Stochastic or genetic background-based epigenetic changes may be a superimposed regulatory element explaining expression differences.
Common TFBS modules could partly explain expression similarity of the ZNF genes.
The detected eQTLs for global MZDE genes well explained expression variations across RILs, 86 % on average.
This could partly explain expression similarity, but regulatory elements from outside the proximal promoter regions might also contribute.
However, instead of explaining expression similarity with cis-regulatory descriptors, transcription factors were found whose joint expression pattern was concordant with that of a cluster of genes.
Another approach has constructed causal graphs from curated interactions in literature and used these graphs to explain expression profiles (Chindelevitch et al., 2012).
The parameters that could explain expression variation in our experiment and the PND were predominantly developmental stage and parameters for short-term solar radiation and temperature, especially in the models that explained a large part of the expression variance.
The results, shown in Figure 6, indicate that models including the 'visit' predictor perform significantly better than models without 'visit,' confirming the central importance of direct experience with a city in explaining expressions of fear when that city is attacked.
Saviano explains: "The expression 'to do a piece' came from contract labor or piecework.
