Sentence examples for experiments workflow from inspiring English sources
The matrix combining the results from the four class comparisons (genes with q value ≤0.1 in at least one class) was analyzed using the Metacore "Compare Experiments Workflow" tool to visualize enriched features in GeneGo pathway maps (GGPM).
Functional differences between miRNA-regulated or non-miRNA-regulated genes were investigated using the Compare Experiments workflow tool (MetaCore).
To determine which functional categories and biological processes were enriched in the experimental list of target genes, we used the Compare Experiments workflow in GeneGo.
Wrappers and experiments workflows are also available from the myExperiment repository [ 42], together with the workflow figures.
The experiment workflow and algorithm assessment designed in this study will provide a standard protocol for other similar studies.
If there is need to change a scientific experiment, workflow developers have to re-design and test the whole workflow again.
In this work, a comprehensive investigation on LOR was performed on benchmark datasets and the experiment workflow and algorithm assessment was presented.
The typical experiment workflow is summarized in Figure 1.
In general, three main experiments were carried out named hereafter qualitative screening, structure annotation and time course experiment (workflow presented in ESM Fig. S2).
Despite all efforts towards standardisation, it is still not possible to account for all potential sources of variation in the experiment workflow; identical experiments performed at different sites have produced significantly different results [ 7- 9].
Methodological and practical details about the use of the Compare Experiment Workflow, Gene List Enrichment Analysis, Network Generation, Transcription Factor Analysis and Network Expansion are described in a recent methodological paper [ 37].
