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Experiments are defined in GPX-MEA as the complete set of bioassays (hybridizations) and their descriptions for a common purpose, following Microarray Gene Expression Data Society (MGED) ontology specifications.
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The experiments were defined in an iterative process.
A design of experiments was defined in order to quantify the effect of the considered factors and their correlation.
The criterion used in these experiments is defined in the overlap between the detection and the ground truth.
The relevant distances in the experiment are defined in Fig. 3 a, together with a schematic representation of the trigger scheme in the experiment in panel b.
"Experiment" is defined in generic terms as controlled comparison of two situations, similar in all relevant respects, in which one is modified by a controlled intervention and the other is left unmodified.
Some precautions necessary in conducting the marker experiments are defined.
For FLBP and NRLBPs, Chi-square distance (CS), histogram intersection (HI), and modified G-statistic (MG) are utilized in our experiments, which are defined in Eq. (11), Eq. (12), and Eq. (13), respectively.
For the comparison of simulation and experiment results, the lattice angle 0° in experiments is defined as a zigzag orientation, which is in the anticlockwise direction nearest to the scanning direction.
The lethality in these selection experiments was defined as the level of oxygen in which D. melanogaster cannot complete development and reproduce.
The optimal biological GS of CSH as observed in the in vitro experiments was defined by comparing the optimal CSH theoretical prediction model with the most ideal parameters using a threshold of 18% for mouse probes [ 17] and 20% for human probes.
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