Sentence examples for expected sequence divergence from inspiring English sources

The expected sequence divergence of 1.3 1.6% falls within the plausible bounds of μ, as determined by the SSUF measure previously, and encompasses the central values used above to calculate absolute rates.

The lower than expected sequence divergence of TEs in comparison with non-mobile nuclear genes of the host species can be explained either by strong selective constraints in TE sequence coupled with a strict vertical transmission, or by horizontal transfer [ 31, 36, 37].

We compared our scoring matrices with the typically used BLOSUM62 scoring matrix with ours scaled to the same level of divergence (62% expected sequence identity).

In particular, it shows no sign of bias when sequence divergence is below 150 PAM units (i.e. above ~29% expected sequence identity).

By default, it is expected that sequence divergence is spread over the sequence (as was previously with the case with protein MSAs), such that scores produce clear maximum and minimum peaks reflecting conserved and divergent positions, respectively.

The expected amount of sequence divergence per site π between two genomes separated by a branch of length D is π = θs D/2, which implies that D = 2 π/ θs, and therefore we obtain that the rate of recombination between two cells is proportional to exp(−2 λπ/ θs).

Thus, we expect the mean sequence divergence between northern and southern localities to be similar to mean divergence among clades.

If these asexual species were truly ancient, then one would expect the minimum sequence divergence to be much greater, reflecting the many mutations since they last shared a common ancestor.

We estimate that the recombination rate is low relative to mutation, and although we only tested for recombination within ATV, we expect that greater sequence divergence and lack of ecological opportunity (e.g., lack of geographic proximity or shared host) limit the amount of recombination between ATV and more distantly related samples.

Divergence in function would be expected to sharply increase sequence divergence.

This is expected due to lower sequence divergence between alleles within a species.