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Exact tests for Hardy Weinberg expectations were conducted using Genetic Data Analysis GDAA) version 1.0 (Lewis and Zaykin, 2001).
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Statistical tests of SNP effects were conducted using the expectation maximization algorithm based on an improved least absolute shrinkage and selection operator (LASSO) [ 31] method.
Tests for deviations from expectations for Hardy Weinberg equilibrium (HWE) and linkage disequilibrium were conducted using GENEPOP version 4.2 (Raymond and Rousset, 1995; Rousset, 2008).
Our analyses were conducted using observations with missing values via the expectation-maximization algorithm in maximum likelihood estimation.
Profile searches were conducted using the PSI-BLAST program with a default profile inclusion expectation (E) value threshold of 0.01 [ 17].
Profile searches were conducted using the PSI-BLAST program [ 13] with a default profile inclusion expectation (E) value threshold of 0.01.
Profile searches were conducted using the PSI-BLAST program (Altschul et al., 1997) with a default profile inclusion expectation (E -value thrE -valuef 0.01.
Analyses were conducted using Excel and SPSS.
Both were conducted using automated phone calls.
All analyses were conducted using MetaWin [30].
Analyses were conducted using Statistica 6.0 (StatSoft).
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