Exact(1)
OBA then produces a detailed report of the semantically expanded annotations for the text, with associated relevance scores for each recognized term and a reference to where the term was located in the text (10).
Similar(59)
The number of non-specific probes hits were annotated in the expanded annotation 'AlleleA_Hits, AlleleB_Hits' columns, while the site of cross-hybridization was annotated in the columns 'XY_Hits' (if at least one hit was on a sex chromosome) and 'Autosomal_Hits' (if at least one hit was on an autosomal chromosome).
Finally, Proteinortho was applied again using the expanded annotation.
This annotation has been added in the 'HIL_CpG_class' column of the expanded annotation.
The level of DNAm for 428,216 probes in our sample dataset was intersected with the expanded annotation for further analyses.
In this article, we presented an expanded annotation of the 450 k array including both compromised probe annotation and additional biologically-relevant annotation.
An annotation of probes into HIL CpG islands using the detailed nomenclature can be found in the expanded annotation column 'HIL_CpG_Island_Name'HIL_CpG_Island_Name
Our expanded annotation has been deposited as a platform on the NCBI GEO (http://www.ncbi.nlm.nih.gov/geo) under the accession [GSE 42409].
Additionally, the ten best alignments that met these criteria were also associated with the sequence in order to provide expanded annotation information.
Thus we identified the amount of repetitive DNA within the Illumina-intended alignment of each probe in the expanded annotation column 'n_bp_repetitive'n_bp_repetitive
For each probe, the distance to the closest TSS, gene name and transcript name was noted in the expanded annotation columns 'Closest_TSS', 'Distance_closest_TSS', 'Closest_TSS_gene_name' and 'Closest_TSS_Transcript'.
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