Sentence examples for expanded alignment from inspiring English sources

Like Bockhorst et al. have shown for the DBL2X domain [24], we have developed an expanded alignment to study local alignments of variable blocks from DBL6ε domains.

This expanded alignment was used to generate a new HMM which was used to re-search the database.

This expanded alignment confirmed the structure prediction for this motif and suggested that it consisted of a single long α-helix, which would form a CC (See additional file 1 for complete alignment).

The key advantage of the NAST algorithm is that it aligns relatively conserved regions well, and avoids expanding the alignment with new gaps in non-conserved regions.

Expanded multiple sequence alignments were generated as necessary using the MEGA5 program (Tamura et al. 2011) and MUSCLE (Edgar 2004) after retrieval of additional sequences from the database used by Curtis et al. (2012) and from the NCBI GenBank nr (nonredundant) database.

The profile multiple-alignment was then expanded, based on the multiple-alignment for each profile, into a multiple-alignment for all the sequences across subtypes.

The scaffolds, with or without CS, instructed alignment of expanded human chondrocytes and of the deposited extracellular matrix while supporting their chondrogenic redifferentiation.

The existing amino acid alignment was expanded using the Muscle algorithm of Geneious Pro.

We finally apply the GWMIN2 heuristic to resolve the conflicts in the expansion conflict graph, and the alignment is expanded with the mappings corresponding to the resulting nodes.

We expanded Pyron and Wiens' alignment with taxa and an additional marker and conducted de novo large-scale analyses that, in turn, informed taxon selection for subsequent smaller-scale analyses using additional methods and models.

If new residues can be added following an alignment then the expanded set Sn is used to re-align the structures.