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The obtained sequences were aligned manually with all existing sequences of the closely related mycobacteria retrieved from the GenBankTM database, compared with the relevant sequences and analyzed using the jPhydit program (Jeon et al. 2005).
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The existing sequences of this strain's 16S rRNA sequence were retrieved by BLAST, and the sequence which was genetically close to the testing strain was downloaded.
Most of the isolates affiliated with the existing sequences of NCBI data base at the percentage identity of 100 or 99.
PG3 assembled genome was compared with existing sequences of phylogenetic markers from the same and related species in order to early detect any unexpected error of misidentification, as reported for other Penicillium species [ 19].
All the fungal ITS rRNA gene sequences showed 100 or 99% identity with the existing sequences of NCBI database except PKU F18, showing 92% identity with Ascomycota sp. AR-2010 (Table 2).
This collection was acquired by The University of Melbourne over two accession periods: in 1972 for its official sponsorship of excavation activities [24, 31]; and subsequently, with the 1987 purchase of over 200 objects from the Australian Institute of Archaeology, supplementing and enhancing the existing sequence of material culture [32].
It encapsulates key concepts and decision support tools to advance the existing sequence of project identification, project formulation, project implementation and post-project monitoring to incorporate multidisciplinary decision making to meet specific environmental and socio-economic objectives.
If the request from patient 3 is added to an existing sequence of visits for staff other than the one preferred (staff = 0), as specified in entry 7, the saving is lower still, as in Eq. (1 ).
Entry 3 relates to the possibility of adding the request from patient 3 to an existing sequence of visits for staff 2, connecting via patient 2. The additional saving, as in Eq. (2 ), is smaller since just one additional patients' preference is satisfied.
Nonhomologous recombination results in acquisition of novel sequences or loss of existing sequences, thereby determining the gene content of the accessory genome.
Finally the identification of bacteria was determined by comparing the obtained sequence with that of existing sequences in the GenBank database using the BLAST program available at the National Center for Biotechnology Information Web site (http://www.ncbi.nlm.nih.gov/, BLAST).
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