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When growing budding yeast under continuous, nutrient-limited conditions, over half of yeast genes exhibit periodic expression patterns.
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Genes that display circadian or other periodic expression patterns can be out of phase in different animals.
To identify the genes with periodic expression patterns, we assumed that the expression profile of a gene exhibiting a diurnal pattern approximated a cosine wave with a period of nearly 24 hr.
By using the mean model and default filtering parameter (p value threshold < 0.67), the searching process identified five groups of genes which had very similar periodic expression patterns).
Given that cytochrome b6f is used by both photosynthesis and respiration, it is unclear which process would be favored in a periodic expression pattern.
A recent study demonstrated that nucleosome depletion at two cell cycle-regulated promoters, CLN2pr and HOpr, ensures periodic expression pattern of genes involved in cell-cycle progression [ 17].
The results indicated that different families exhibit different expression patterns during plant development.
LXRs have two receptor subtypes LXRα (NR1H3) and LXRβ (NR1H2)—that exhibit different expression patterns and perform different functions155.
Some miRNAs exhibit special expression patterns.
Many KDMs exhibit dysregulated expression patterns in disease.
Furthermore, at least some recent paralogs exhibit divergent expression patterns.
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