Other WMS typically assume direct access to component executables and manage the execution of pipelines either locally or on a compute cluster.
An open challenge is how to optimize the execution of pipelines specified in, for example, CWL.
Staggered execution of multiple pipeline jobs can also improve resource utilization as shown in [17, 27].
Execution of this pipeline on a Pyrobaculum species, with a genome size of 2.2 megabases, yielded 2863 predicted genes.
The execution of this pipeline has been fully automated and integrated with in house computational servers used via cloud computing.
Therefore, an optimized execution of the pipeline could be achieved by dynamically seeking the best resource mapping.
A special interface for data submission allows the execution of a pipeline, based on DT-Hybrid, predicting new targets with the corresponding p-values expressing the reliability of each group of predictions.
Table 3 reports hardware configurations for each type of VM instance (see Section 2.5) and the differentiated hourly prices offer, supplied to PZ and AZ customers for the execution of each pipeline operation.
However, this means that users must have expertise, knowledge, and hands-on experience in metagenomic date analysis per se, in order to ensure correct execution of the pipeline and accuracy of results.
If BQSR is not appropriate, the user first uses the initial informed pipeline in which VQSR is performed on the raw variants to generate a temporary sensitive variant resource which is used during the execution of the informed pipeline that immediately follows the initial informed pipeline.
Many of these applications benefit from fast execution of the FEM pipeline.
