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The model's execution time has been successfully improved (by a factor of 4.5) by partitioning its data input and executing the model simultaneously (in parallel) on those partitions.
The choice made depends on the kind of functionality of the SuD and on the intended use of the notation: sketching desired properties, building a prototype, executing the model, checking the model, or proving a theorem.
(TIFF 60 kb) Additional file 2: Matlab code executing the model used in this study.
Noting this potential, executing the model on existing microarray data available through NCBI's expression microarray repository, the Gene Expression Omnibus (GEO) [ 40], may also lead to new SNPs.
As parameters α, β and γ are constrained by experimental data, the only free parameters of interest are average DNA damage, 〈 D〉 and how the damage differs from cell-to-cell, σ D. The code executing the model is programed in C++ and completes within minutes on a standard PC.
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An alternative is to realize behavior directly by executing the models using a specialized interpreter.
These pages provide easy access and documentation for models that archives both the structure of the models and the results of executing the models.
Next, we predicted the response by executing the models with in silico perturbations that corresponded to the withheld experimental conditions.
Furthermore, an example of collaborating design process was given to simulate and execute the model.
After setting the command line input parameters, it calls one of the functions in network.py (eg. runTrainTest2targets which runs the full sequence of functions to execute the model.
To make the coupled models publicly accessible, a web-based application of the coupled models is implemented in the Hadoop-based cloud computing environment, which allows users to access and execute the model simultaneously without an increase in latency.
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