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The student "executes" the model by selecting values for the non-parameter nodes.
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Furthermore, an example of collaborating design process was given to simulate and execute the model.
After setting the command line input parameters, it calls one of the functions in network.py (eg. runTrainTest2targets which runs the full sequence of functions to execute the model.
The choice made depends on the kind of functionality of the SuD and on the intended use of the notation: sketching desired properties, building a prototype, executing the model, checking the model, or proving a theorem.
To make the coupled models publicly accessible, a web-based application of the coupled models is implemented in the Hadoop-based cloud computing environment, which allows users to access and execute the model simultaneously without an increase in latency.
The model's execution time has been successfully improved (by a factor of 4.5) by partitioning its data input and executing the model simultaneously (in parallel) on those partitions.
The user follows three steps to execute the model.
PE executed the model operations in collaboration with WD.
(TIFF 60 kb) Additional file 2: Matlab code executing the model used in this study.
Given a network topology, it is possible to execute the model and compare its behavior with the one observed empirically.
Noting this potential, executing the model on existing microarray data available through NCBI's expression microarray repository, the Gene Expression Omnibus (GEO) [ 40], may also lead to new SNPs.
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