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We also provide basic data in R that will be used from JAGS to execute the models.
It was not possible to execute the models for time periods beyond one year since index date due to the decreasing numbers of patients over time.
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Furthermore, an example of collaborating design process was given to simulate and execute the model.
After setting the command line input parameters, it calls one of the functions in network.py (eg. runTrainTest2targets which runs the full sequence of functions to execute the model.
To make the coupled models publicly accessible, a web-based application of the coupled models is implemented in the Hadoop-based cloud computing environment, which allows users to access and execute the model simultaneously without an increase in latency.
However, sbrich discovered that if he added a new graph to plot some variables of particular interest, then saved that graph to a session file, the graph wouldn't be recreated properly the next time he used NEURON to execute the model--instead, the graph had a blank canvas.
The user follows three steps to execute the model.
Given a network topology, it is possible to execute the model and compare its behavior with the one observed empirically.
Hence, as well as using individual runs to examine the reasons for state changes, we can execute the model a number of times to estimate the average system behaviour, analyse the system's variability, and identify potential extreme behaviours.
Scripts used in this project, including SED-ML [ 66] to execute the model at different spatial positions and reproduce results from this paper are available from http://sourceforge.net/projects/EpidermalERKMAPK/.net/projects/EpidermalERKMAPK/
An alternative is to realize behavior directly by executing the models using a specialized interpreter.
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