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Early model-driven engineering (MDE) assumed simple pipeline-like scenarios specified by the Model-Driven Architecture approach: platform-independent models that describe a software system at a high-level of abstraction are transformed stepwise to platform-dependent models from which executable source code is generated.
The complete simulation is freely available (executable, source code, protein sequences, generated models).
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Availability and implementation: http://genome.sph.umich.edu/wiki/RAREMETAL for executables, source code, documentation and tutorial.
Availability: Executables, source code, and exon-junction libraries are available from http://grimmond.imb.uq.edu.au/RNA-MATE/ Contact: [email protected] Supplementary information: Supplementary data are available at Bioinformatics Online.
The software executables, source code, and sample images are available for download [ 20] and use under the Creative Commons Attribution-NonCommercial-ShareAlike 2.5 license [ 21].
Availability: Executables, source code and sample data are available at https://bitbucket.org/biovizleuven/triovis. Screencast is available at http://vimeo.com/user6757771/triovis.
Availability: Executables, source code, and sample data are available at http://socs.biology.gatech.edu/ Contact: [email protected] Supplementary information: Supplementary data are available at Bioinformatics Online.
Availability: Executables, source code, junction libraries, test data and results and the user manual are available from http://grimmond.imb.uq.edu.au/X-MATE/.
Availability: Executables, source code, and sample data are available at http://solidsoftwaretools.com/gf/project/socs/ Contact: [email protected] Supplementary information: Supplementary data are available at Bioinformatics online.
Availability: Executables, source code, sample data, documentation and screencast are available at https://bitbucket.org/biovizleuven/pipit. Contact: [email protected] Supplementary information: Supplementary data are available at Bioinformatics online.
As an open-source tool, the executable and source codes of AFST are available online (http://code.google.com/p/afst).com/p/afst
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