Excluding vector sequence, these contigs had a cumulative length of 85.4 kb.
After excluding vector and mt sequences, 854 individual nuclear cDNA sequences and contigs remained for the complementary database search.
Among the 576 clones sequenced, 548 were considered for contig assembly and annotation after excluding vector sequence contamination.
where V is the set of all possible motion vectors, excluding vectors that are previously found as best candidates.
We excluded vector regulation from explaining patterns in our data as this mechanism relies on variation in vector density and we adjusted all of our analyses for a metric of mosquito abundance (i.e., an index of urbanization).
From the individual reads we excluded vector, primer and low-quality sequences, then we assembled the reads using Phrap [ 38].
Multiple sequence alignment were performed to exclude vector sequences and to identify redundant (not unique) sequences using the program AlignX (Vector NTI Suite V 8.0, InforMax, Invitrogen, Carisbad, CA, USA) with an engine based on the Clustal W algorithm.
Thus, sequences from each group of strain-specific SSH libraries were trimmed, in order to exclude vector sequences and poor quality regions (Phred < 20), and aligned with the aid of CAP3 [ 74].
For each of the 6 strains, the sequenced clones have been trimmed, in order to exclude vector sequences and poor quality regions (Phred < 20), and aligned with the aid of CAP3, generating 1,063 contigs, which contained 6,712 sequences overall.
While we initially estimate (1) without either of these vectors, and then include only the year fixed effects, to save space most of the tables shown below report results from regressions that include both vectors (although Table 1 also reports results excluding the vector of state fixed effects).
Because of the concentration of Hispanics in a few, high-unemployment states, excluding the vector of state indicators is incorrect.
