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The total energy increment excluding edge energy change is shown in Fig. 3a.
Only polygons completely contained inside the tessellated area are included in the analysis thus excluding edge effects.
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Zeros in the indicator vectors, as presented in the following section, exclude check nodes from the expanded tree of the PEG algorithms and this exclude edge placement connecting to those check nodes.
(We intentionally exclude edge orbit 0 in the only 2-node graphlet, G0, as each edge touches exactly one G0, i.e. itself).
Microinvasion was defined as the presence of invasive cancer measuring ⩽1 mm (patients with an invasive component of greater size were considered to be invasive cancers and were excluded)(Edge et al, 2010).
The typical width W is estimated from the central 50% of intensity profiles to include only well-behaved portions of the image, and exclude edges.
We also averaged the predicted edge weight across the networks in each ensemble, excluded edges with low average weights (<0) and, for the remaining edges, determined the difference in these average edge weight values between the ensembles.
Fig. 3 a The total energy change excluding the edge energy change 3 Γ vs. the cross section area (the dash line is the critical value of minima about 136.2 nm2 in different situations).
Tai and Yang [28] extended Immerkaer's work by introducing the Sobel operator for edge detection to exclude the edge pixels.
The polygon surrounding i formed by the boundary edges, is denoted as ∂ ω i, and the inner region of the patch, that is, excluding the boundary edges, is denoted as ω i.
To generate randomized versions of the model, we applied a method similar to the switching algorithm used in Milo et al. [ 27] except for not excluding self-edges since the Endomesoderm network itself already contains self-edges.
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