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This motif scored significantly higher in promoters (sequences extending 500 bp upstream of TSS) of strongly MSL-bound, expressed genes than in promoters of weakly bound, expressed genes when using the previously excluded test set (Mann-Whitney U Test p = 7.3 × 10-3).
We excluded test files from the scope of the analysis by ignoring all files that contain the word "test" on its path.
We excluded test set elements from the parameter inference process by element-wise multiplication by W tr.
A LDA classifier was trained with the selected gene expression ratios and the group membership was predicted for the excluded test dataset.
In the analysis, we excluded test and treatment information from persons in the intervention group who returned a home sample but stated that they lived outside Rogaland county (for instance students).
We also excluded test taken within 3 weeks after the previous hospitalization due to the fact that these tests may reflect a causal association of last hospitalization event on test scores which is not direction of causation we want to study.
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5 This latter category comprised 68% of potentially excluded tests.
This resulted in three included tests, five excluded tests, and nine tests on which no agreement could be reached.
Among the participants, 35.4% (68% of potentially excluded tests) did not meet EOT criteria for acceptability.
Since guidelines in 2001 first recommended that resistance tests be performed for all patients who had not received antiretroviral therapy, 3 we excluded tests conducted before 2002.
Additionally, in controlling for multiple testing, we excluded tests for GSTM1 and GSTA1 genes as they are marginal to GSTM1/GSTA1 interaction.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com