Sentence examples for exclude alignment from inspiring English sources

The whole set of somatic variants was manually checked within the BAM file in order to exclude alignment errors that in most cases occur in repetitive regions.

Alignments were trimmed with trimAl (Capella-Gutiérrez et al. 2009) with the parameter "-gt 0.8" to exclude alignment columns with gaps presented in more than 20% of the sequence.

The choice to exclude alignments and tree replicates has the advantages of limiting the file sizes in the repository and maintaining the focus of the database.

Oligonucleotide probes (Table 2) were designed using the CloneManager5 program with following submission of the sequences a NCBI BLAST search [ 25] to exclude alignments with other genes.

We then selected HERV pairs with DNA sequence identity (calculated as the fraction of identical positions over the number of aligned positions) not less than 94% and alignment length greater than or equal to 2 kb (allowing us to exclude alignments of only LTRs).

The relatively high coverage (x51 - x86) allowed testing the reproducibility of the alignment and thereby excluding alignment errors and sequencing errors over real changes.

After excluding alignments with an e-value <10-5, two two best aligning, but different transcript models were implemented into the annotation table.

This policy allows so called 'multireads' from genes with multiple copies to be reported, but excludes alignments to low-complexity sequence, to which failed reads often align.

Additionally, likelihood bootstrap values from the reduced dataset obtained by excluding alignment-ambiguous regions are indicated.

We excluded alignments of greater than 100 unambiguous codons across all nine taxa, leaving 3,180 for analysis.

If this view is correct, the benefits of interspecies comparisons of affinity density outweigh the obvious shortcomings from excluding alignments.