Values lower than 0.5 are hard-thresholded to 0, except for the datasets from M3 D, which are thresholded at 0.8 and 0.85, respectively.
All datasets, partition files and starting trees, except for the unpublished dataset d37831_6, are available for download at http://wwwkramer.in.tum.de/exelixis/pointerMeshData.tar.bz2.
Mean Sma3s accuracy using different annotation types (GO, Swiss-Prot keywords and pathways, and InterPro) was higher than 0.8 (except for the invertebrate dataset), and was even higher (0.9) for specific datasets such as bacteria.
However, except for the Colon dataset, the difference between the first place and iRDA on four datasets (Brain, Lung, Lymphoma, and Prostate) is relatively small, with a maximum of 0.15 %.
Known background Model: In this model, except for the encrypted dataset and metadata set the owner upload, the server is assumed to have additional knowledge on the dataset, e.g. the subject and its related statistical information.
The data were obtained as CEL files in all datasets, except for the two datasets on lung cancer grade in which the data are available only as Gene Expression Omnibus (GEO) series matrix files.
Among the three CENI models, C-CENI is usually the fastest one except for the MemeTracker dataset when transmission likelihood is a Rayleigh distribution.
Each time (4095 repetitions corresponding to all 212 possible subject combinations, except for the actual dataset), the maximum number of consecutive significant latencies in the surrogate data was compared to the observed cluster size of 5 consecutive significant latencies.
For all of the synthetic datasets wKIERA selected the correct relevant variables among the first top-ranked components of
