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All post-sequencing analysis except for alignment and file conversion was coded in the R language, making use of the Bioconductor packages ShortRead [ 35], Biostrings, and Rsamtools.
Except for alignment 3, GTR+Γ [ 93] was proposed to be the best fitting evolutionary model according to Akaike- (AIC) and Bayesian (BIC) information criterion [ 94, 95].
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Twinning has been considered as a potentially important mechanism, but microscopic examination reveals that the process is not particularly extensive, and that on the (010) face there is no correlation between the appearance of twin lamellae and the ERSS, except perhaps for alignment along the ( left[10overline{1}right] ) direction.
All alignment tools were run with a single thread for alignment except for multi-thread tests.
Additionally, to limit the number of prokaryotic taxa, only a maximum of four taxa in each prokaryotic group was retained for alignment, except for the cyanobacteria and alphaproteobacteria, from each of which eight taxa were retained.
After trimming and filtering, 45.8−52.7 M high-quality sequence reads (90-bp paired-end) from each of the individual varieties were retained for alignment, except for Sicot F-1, for which 27.2 M processed single-end reads were used in alignment (Table 1).
In contrast, BIC favors one component, except for mitochondrial alignment in which four or six components are virtually indistinguishable (44,416.88 versus 44,416.75), and AIC three or four components.
For alignment, languages are assumed to be independent except through their shared descent from the ancestor.
Samples were subjected to the alignment procedure during deposition on the coverslip (SI-3) except for the data described in Figure S10e (serving as a control for alignment).
A is for alignment.
A is for Alignment (title changed).
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