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Supplementary Figure 7 Examples of enhancer changes across the genome.

(b) Genome Browser images showing examples of enhancer switch during T cell activation.

There are very few other published examples of enhancer and suppressor screens using zebrafish.

Although it is counterintuitive to think that an enhancer could reside within an exon as this could present problems for the transcriptional machinery accessing this sequence, there are myriad examples of enhancers residing in introns, which would present the same problem, and yet this is obviously overcome.

Examples of enhancer-trap lines are shown in Figure 2A-H.

(a) Example of enhancer accessibility loss coinciding with H3K27ac loss but not H3K4me1 loss on chromosome 8.

(b) Example of enhancer accessibility loss coinciding with H3K27ac loss but not H3K4me1 loss on chromosome 10.

(c) Example of enhancer accessibility loss coinciding with H3K27ac loss but not H3K4me1 loss on chromosome 2.

However, there are examples of verified enhancer function at even greater distances.

DOI: http://dx.doi.org/10.7554/eLife.02105.018 10.7554/eLiFigure05.019 Figure 4 figure supplement 2. Examples of Tyr1P enhancer association upstream or downstream of CXCR4, DUSP2, and IER5 genes.

For example, hypomethylation of enhancer regions that regulate neuropeptide expression in the hypothalamus have been shown to be strongly influenced by early life stress (Murgatroyd et al., 2009).