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Examples of assembly tools include ALLPATHS, SOAPdenovo and VELVET [ 27- 29].
Programs such as EULER [ 53] and Arachne [ 54] are examples of assembly systems that include error correction components.
In this section, we show two examples of assembly errors that are caused by erroneous k-mers, and are corrected by SEQuel.
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Three examples of assemblies identified from the pre-conv analysis are shown in Figures 6C 6H (see also Figure S6).
The PFR found in some protists is an excellent example of assembly of proteins into filamentous structures that then interact with other filaments to form more complex assemblies.
While several statistical algorithms have been developed to infer unknown haplotypes from genotype data [ 10- 12], the improvements of sequencing technologies will enable researchers to assemble haplotypes from sequencing data with very high accuracy (for examples of existing assembly algorithms, see Bansal et al. [ 13], Bansal et al. [ 14], and Schatz et al. [ 15]).
Examples of the assembly of phylum level body plans are, however, very rare.
As source code was made publicly available before the writing of this manuscript, several examples of genome assembly using PRICE have been published (Runckel et al. 2011; Grard et al. 2012; Holmes et al. 2012; Kaysser et al. 2012; Stenglein et al. 2012a, b; Melters et al. 2013).
Three numerical examples of plate assemblies of different cross-sections are given and lead to some useful conclusions.
In this article, we discuss representative examples of supramolecular assemblies that interact with DNA, RNA, or proteins in a biologically relevant context.
Clustering of the co-evolutionary network reveals many examples of modular assemblies of genes that take part in a specific biological process.
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