As an example, proteins such as invertases catalyze hydrolysis of sucrose, provided by the phloem conducting complex, into glucose and fructose during berry ripening.
For example, proteins such as 2A show a particularly pronounced difference in inter- versus intra-group conservation.
For example, proteins such as TrpD (Rv2192c), AroA (Rv3227), RibC (Rv1412) do not appear to be expressed in any of the experiments considered.
For example, proteins such as ankyrin-rich membrane spanning protein, which is often coexpressed with TrkA and p75, might interact with both receptors and acts as a scaffolding protein that promotes and stabilizes the interaction.
For example, ECM proteins such as TN-C are re-expressed only in tissues undergoing active remodeling, such as in fibrotic lesions.
For example, purified ECM proteins such as collagen IV, laminin and vitronectin differentially influence hESC-RPE growth, pigmentation and barrier function (Sorkio et al., 2014; Williams and Burke, 1990).
Most genes were selected from the literature and have important roles in anabolic or catabolic pathways during osteoarthritis (for example, cartilage matrix proteins such as collagens, relevant degrading enzymes such as MMPs and aggrecanases, and genes from important catabolic [IL-1, tumor necrosis factor-α] and anabolic [BMP, transforming growth factor-β] signaling pathways).
Examples include BTB proteins such as the homodimeric adaptor SPOP in complex with Cul3NTD and heterodimeric SPOP SPOPL (SPOP-like) complex that regulates CRL activity by determining its oligomeric state [ 121].
Interaction networks, such as protein-protein interaction (PPI) networks, are often used to visualize interactions among entities (for example, proteins), but such networks do not capture the directionality of interactions (for example, "who stimulates whom").
Some genes with leader peptide sequences that are removed in mature proteins have codon numbers based on the mature protein in HGMD, rather than having the first Met as +1 according to the recommendations by the Human Genome Variation Society (http://www.hgvs.org/mutnomen/), for example, the coagulation factor proteins such as F5.
Others have described the binding of cell surface expressed integrin-αvβ6 to RGD motifs which are widely distributed, for example in extracellular matrix proteins such as fibronectin, vitronectin and tenascin-C as well as the latency-associated peptide (LAP) of TGF-β1 and TGF-β3.
