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The annotation on the row side indicated an example of annotation by color bar.
An example of annotation is the following: if an annotation method m associates a CDS c to an EC number e with a score s, we create a SubseqDBxRefAnnotation object with the following attributes: method = m, object o = subsequence of c, qualifying note n = e, score = s and parent = null.
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When I look at the online PEN catalogue, and the hard copy Sotheby's one, why are there so few examples of annotation by each author?
Several additional examples of annotation differences can be found in the Supplementary Discussion S3.
Fig. 7 Mturk instruction on creating annotations Fig. 8 Mturk instruction to annotators: Examples of construction materials for annotators without construction background Fig. 9 Mturk instruction to annotators: Good and bad examples of annotations Fig. 10 MTurk HIT interface - BIM overlay on (left); and BIM overlay off (right).
First, we discovered examples of annotations in the HUPO list that are not completely accurate, as well as examples of redundant entries (see below).
Examples of annotations include the refGene.txt file downloadable from UCSC's genome browser site (Fujita et al., 2011) that contains the gene ID, name, chromosome, strand, and start and stop positions of the transcript.
Domeo (32) is an example of an annotation system in which the user can manually annotate a text or annotate automatically using a selected set of ontologies.
The best-known example of functional annotation by comparative analysis is the transfer of functional annotations between orthologous genes, but many other associative methods have been developed [ 3] including conservation of gene order [ 4, 5] and phylogenetic profiling [ 6, 7].
As an example of such annotation, most of the larger SGP contigs (Clustered data summary > SGP > Contigs and best annotation hits) display hits in PDB and are suitable for modelling of at least part of their sequences.
Figure 2 An example of ToBI annotation for the phrase 'design improvement and schedule'.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com