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Evidently, for target loop sequences with no suitable structural example in the database, no prediction can be made.
For example, in the database, there are 19 miRNAs and 41 miRNAs for Brachypodium and wheat, respectively, while there are 375 miRNAs in the database for M. truncatula (miRBase 17).
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Table 2 depicts five representative examples present in the database that display the diversity of β-strand interfaces.
We provide example code in the database documentation for removing between-platform batch effects with the ComBat method (43).
Location given is for an example RT in the database Of the total LTR retrotransposon sequences identified, 822 or 67.4% were found to be fragmented or truncated elements.
Location given is for an example RT in the database There are 3 × more LTR retrotransposon sequences in the pericentric regions of the chromosome than in the arms (48.069 vs. 16.019 elements per Mb DNA, p < 0.005).
Location given is for an example RT in the database We have previously determined that two classes (gypsy-like and copia-like) of full-length LTR retrotransposons comprise ~17% of the Oryza sativa genome[ 32].
For example, in the Tarnocai database [41] swamp-rich regions like southern Ontario might be underrepresented for post-glacial peat accumulation and the Holocene wetland carbon sink.
This is done, for example, in the PROSITE database, a dictionary of functional signatures in protein sequences [ 9].
The term under indictment is "protein binding" which is heavily present, for example, in the GOA database of annotated proteins.
For example, in the UniProt database query, students are asked to find the list of species that has an alpha hemoglobin (HBA) sequence identical to human HBA.
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