These transitions occur after the transducer has finished processing the previous character from the ancestral sequence (for example, after the ancestral character has been either matched or deleted in the descendent), and the transducer will remain in the wait state until the ancestral sequence emits the next character.
Certainly the case of cytoplasmic ribosomes is an example of the ancestral yeast cell taking advantage of WGD event and doubling the subunit count in this protein complex.
As a hypothetical example, the ancestral order in a region may be 1-2-3-4-5-6; while the order 1-2-5-3-4-6 may be observed in a rearranged genome.
For example, the ancestral OPR in algae contained at least 10 introns, whereas all five OPR genes contained only 6 10 introns.
In genetic association studies, for example, the ancestral background of human subjects can have a strong confounding effect [for example, [ 2- 5]].
In humans, for example, almost all the ancestral genes persist on the X chromosome but have been lost on the Y chromosome (Skaletsky et al. 2003).
For example, in strain YJB9929, the ancestral TLOα9/ TLOα 10 configuration on Chr4R had homozygosed to two copies of TLOα 10 by the end of passaging (Table 1).
In their recent work, Di Rienzo and Hudson [2005] proposed an evolutionary framework for common diseases, listing numerous examples where the ancestral allele represented a susceptibility variant.
For example, the rpl21 gene loss of the cp genomes in the ancestral clades of gynosperms and angiosperms was compensated by the gene from the mitochondrial genome.
In the hypothetical example 2-5, 5-3, and 4-6 arendpointsnts" -derived adjacencies absent in the ancestral gene order.
