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For example, gene duplication promotes expression divergence of gene copies [ 31] that affects the retention and functionalization of redundant gene duplicates [ 32, 33].
For example, gene duplication events giving rise to the subgroup including SlHAG19 to SlHAG26 likely occurred only in tomato while the orthogroup that comprises SlHAG6 appears to have experienced an expansion only in Arabidopsis.
For example, gene duplication events may lead to a lineage-specific expansion that results in novel orthologues that can take on novel functions different from that of the parent gene.
This hypothesis is not specific to gene dose in the context of sex chromosome evolution but should also apply to, for example, gene duplication and expansion of gene or protein domain families (Veitia 2005).
For example, gene duplication may often be followed by subfunctionalization [ 5], where each of the two gene copies takes over the function of the ancestral gene in part of the tissues of the ancestral gene.
For example, gene duplication events and differential extinction of the resulting paralogues across different lineages can lead to a tree that appears to reflect lateral transfer but that really describes the history of a duplicated gene.
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For example, gene duplications followed by differential gene loss may also yield the unexpected phylogenetic relationships that are hallmarks of LGT.
For example, gene duplications are known to be involved in adaptive evolution in response to diet [ 2- 4], chemical challenge [ 5, 6], and reproductive incompatibility [ 7, 8].
With the exception of a fusion of the ftn2 gene with its neighboring open reading frame (PCC0126), thus far there is no bioinformatic evidence for the evolution of novel organelle-derived functions in this genome via for example, gene duplications or horizontal gene transfer [ 27, 30].
Further, the presence of ten distinct genes comprising the PE-PPE domain as paralogs in M. tuberculosis strain H37Rv is an example of gene duplication.
In each example a gene duplication event must have preceded the divergence of the species because the inverted repeat appears in each species.
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