For example, for the phylogenetic network N on 𝒳={ a,…, l} and the concrete drawing θ of the forest ℱ(N) in Figure 3, both (a, b, c, d, e, f, g, h, i, j, k, l) and (a, d, f, g, h, l, i, j, k, b, c, e) are non-interleaving total orders on 𝒳 w.r.t.
In general, it would be interesting if the seed grouping and group relations could be automatically derived and weighted, for example from phylogenetic trees.
This condition implies that there are severe limits to the model, and areas, for example phylogenetic analysis of prokaryotes, where is has proved less effective (Bapteste et al. 2009).
For example, a phylogenetic analysis for the SWEETs (Sugar Will Eventually be Exported Transporters) gene family based on representative monocotyledon (A. comosus, S. bicolor, O. sativa) plant species suggested that the SWEET gene family is ancient and its evolutionary history can be traced in duplicated order (Fig. 4).
For example, the phylogenetic testsuite we applied for MTBC uses three phylogenetically informative SNPs for every lineage and imposes logical constraints on sublineages.
For the Standard Bootscan method (SB), for example, phylogenetic NJ trees are inferred and the topological distance between ancestor and descendant sequences is computed.
For example, phylogenetic isolation has been used as a unique value for prioritizing species conservation efforts (Redding et al. 2010).
For example, a phylogenetic tree can be constructed for each gene separately, or several phylogenetic trees can be constructed using different methods.
For example, phylogenetic trees were used in the form and function unit to help students reason about cardiovascular adaptations of animals.
For example phylogenetic analysis of the sequences can reveal what types of microbial organisms are present in a sample.
