For example, dependency of two binding sites, X and Y can be determined in minterms motifs such as XY, (XY)', XY' or (XY')', whereas non-dependency of X and Y are determined for motifs X+Y and (X+Y)' (manuscript in preparation).
For example, observed dependencies between binding site nucleotides [30], [16] can be incorporated into motif models [31].
e, Dependency score distributions and associated biomarkers for example biomarker genetic dependency relationships.
For example, the dependency between y i b and y i b + 1 for an arbitrary b is much stronger than that between y i b and y i b + k when k ≫ 1.
In Condor, for example, job dependency can be conveniently handled as so-called "DAGMan jobs" (Appendix – b).
For example, the dependency matrix of the T-cell model tells us, that LAT-phosp exerts purely positive effects on ERK, JNK, IKK, and NFAT, because there are only positive paths from LAT-phosp to these species and no negative feedback is involved.
Despite these few examples of dependency or mutualism between Wolbachia and their hosts, Wolbachia are mostly described as facultative endosymbionts that negatively influence their hosts' life history traits, including body size [11], fecundity [11] [13], survival [13] [15], larval competitiveness [16], male fertility and sperm cyst production [17] and mating choice [18].
In such examples, the dependency on commercial feed, chemical fertilizer, petroleum fuel and electricity is either minimized or eliminated altogether.
A further option to consider the scenario-based LID might have been to model the observed dependencies, for example, via a hierarchical model such as the Rasch testlet model (Wang and Wilson 2005).
It introduces an additional blanket that could, for example, encode genetic dependencies.
