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The utility and a method for integrating data within and across DNA microarray studies is shown in an example analysis using DrugMatrix data deposited in CEBS by Iconix Pharmaceuticals.
An example analysis using DR-Integrator is included as supplemental material.
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For example, an analysis using NTT shows that for 100 ha of crop land, a C sequestration equivalent of approximately 25 38 Mg C y−1 for a farm in Ohio, and 13 21 Mg C y−1 for a farm in Virginia could be achieved with better nitrogen management practices.
In a recent example, genomic analysis using Chip chip arrays demonstrated that the promoter region of Notch1-regulated genes were bound by CSL, which helped reveal several new CSL-dependent targets of Notch signalling (Hamidi et al, 2011).
For example, previous analysis using facility data from the Assessment of Human Resources for Health in Sri Lanka revealed potentially unintended gender imbalances in national health professional practice regulations: wide differences between men and women in rates of dual employment related to occupational differences in the right of private practice after duty hours at a government job.
We also provide with each supplementary material Appendix example outputs for the analysis, using example data we provide (see later), as well as guidance on how to interpret the outputs.
An example is an analysis using the quantitative SPECT (QSPECT) dual-table autoradiographic (DTARG) method [2].
The technique can be further optimized for use in rice proteomics research, for example, by differential analysis using gel-free methods, by using protein arrays for protein protein interaction, or by organelle purification [29, 35].
This technique, of using numerical integration of the underlying system over short time intervals to find both stable and unstable objects, is an example of bifurcation analysis using timesteppers [76].
For example, performing association analysis using the PCA-based method on transformed traits sacrificed the interpretability of the results.
For example, a transcriptome analysis using an oligomicorarray representing ±20,000 cassava genes revealed 1300 abiotic drought stress related genes up-regulated in cassava [ 64].
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