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In a section about genetic research in animals, for example, viewers manipulate cursors on a large display examining a "tree" of related creatures.
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For example, Rinke et al. [ 7] examined a tree of concatenated alignments comprising newly characterized archaeal lineages, the concatenated result recovered the familiar three domains tree, with eukaryotes branching as sisters to archaebacteria.
Examining a family tree of giant water bugs, the researchers mapped which species seek temporary water holes for mating.
Using these data we examine how closely a tree of LINE elements follows the generally accepted tree of placental mammals [11] [15], [18], [19].
Examining a number of manually inferred trees that attempt to minimise the number of aberrant polymorphisms identified a tree that has Bison as a divergence from the Gaur/Mithan/Banteng lineage and Yak as a divergence of the B. taurus clade.
Among the most interesting observations when examining the tree of figure 1 is that repeated ang gene duplication events occurred during the radiation of murine and rat clades.
This program takes user-inputted phylogenies with fixed sets of taxa to construct a tree that clusters similar topologies together, allowing the user to examine a set of trees and determine how similar topologies are to one another; here we use this program to examine whether gene trees from both the Sanger and NGS datasets are similar to the species tree topology.
Importantly, when examining the phylogenetic tree of the DNA-A sequences (Additional file 2: Figure S1), several distinct variants of EACMV and EACMKV are specific to the SWIO.
We examine the Tree of Life (TOL) as an evolutionary hypothesis and a heuristic.
This was not because SSU rDNA is a "bad" phylogenetic marker; in fact, it remains among the most useful individual genes for examining the global tree of life.
Rising to the occasion, Riley examined a plot of hemlock trees and monitored their population.
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