Sentence examples for evolution package from inspiring English sources

All analyses were conducted using the 'Comparative analysis of phylogenetics and evolution package in R (caper)' [ 31].

Non protein-coding branch length estimations were calculated using a maximum likelihood approach (BASEML [ 54]) as implemented by the molecular evolution package DAMBE [ 55].

Analyses using the ACE function in the Analyses of Phylogenetics and Evolution package (Paradis et al. 2004) and BaysianTraits (Pagel et al. 2004) gave essentially identical results; here we only present the results from ACE.

The gain and loss rates were estimated using a maximum likelihood estimation implemented in the ACE (ancestral character estimation) function of the APE (analysis of phylogenetics and evolution) package (Paradis et al. 2004) in R and BayesTraits (Pagel et al. 2004).

Pagel's λ was calculated in R version 2.8 using the APE (Analysis of Phylogenetics and Evolution) package [43] and code written by RP Duncan (Lincoln University, New Zealand).

The slightly modified "plot.phylo" function from the analysis of phylogenetics and evolution (ape) package was used to display the clustering results [ 16].

The slightly modified "plot.phylo" program from analyses of phylogenetics and evolution (ape) package of R was used to show the clustering results [ 11, 12].

Other software run locally included: R [ 20] and the Analysis of Phylogenetics and Evolution (APE) package for constructing and plotting phylogenetic trees and plotting the Principal Coordinate Analysis (PCoA); ClustalW2 [ 21] and Muscle [ 22] for multiple sequence alignment; and Python [ 23] to automate steps in analyses and produce the heatmaps (generated using matplotlib).

I chose to believe that evolution was packaged with the original matter that resulted in the big bang.

This review focuses on transpiration phenomenon and moisture evolution in packaged fresh horticultural produce.

Sequences were aligned by ClustalW [ 49] implemented in the Molecular Evolution and Genetics Analysis MEGAA) software package version 5 [ 50].