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By rejecting the turtles plus crocodilians grouping, our analysis could possibly be interpreted as evidence for a parallel evolution of these genomic features in the two lineages, or, perhaps more plausibly, recent evolution of bird-specific features in the avian lineage.
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Interspecific DNA synteny is much better preserved in euchromatin than heterochromatin, showing the qualitative difference in evolution of these respective genomic domains.
These features render CoGemiR a valuable resource to gain insight into the evolution of the genomic organization of microRNAs.
Taken together, this provides critical information on the evolution of the genomic composition of populations.
The current model of mosaic genomic domains can explain global evolution of the genomic core of cyanobacteria.
Transposable elements (TEs) were undoubtly closely involved in the evolution of the genomic sequences we observe today.
Thus, the speed of evolution of this genomic region would not be expected to result in removal of all inactive paralogous gene copies.
Although we can not confirm the order of duplication events by the present data, we can state that segmental duplication events characterize the evolution of this genomic region.
The same approach applied between species does not easily describe how recombination rate evolves and how it interacts with evolution of the genomic sequence.
These differences could provide insights into the impact of low recombination rate on the evolution of the genomic landscape (e.g., repeats and gene characteristics) of the F element.
These results are also important because these repeats may affect the evolution and regulation of these genomic regions disproportionately (Kudla et al. 2006), and transposable elements have played a significant role in the evolution of other vertebrate genomes, such as in mammals (Mikkelsen et al. 2007).
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