Sentence examples for evolution analyses were from inspiring English sources

All minimum evolution analyses were performed using MEGA 2.1 [ 40] and PAUP [ 41], while likelihood and parsimony analyses, as well as the estimation of the specific gamma parameters for the minimum evolution analyses were carried out using PAUP.

Two runs of computations were done on the 251 proteins from Cluster 4, and evolution analyses were done through the same 19 species.

Minimum evolution analyses were performed using Kimura two-parameter distances with transversions-only, gamma corrected Kimura two-parameters distances with transversions-only, and paralinear distances.

Tumor, treatment and disease evolution analyses are available in the paper of Largillier et al.[ 9].

The right sampling of homologous sequences for phylogenetic or molecular evolution analyses is a crucial step, the quality of which can have a significant impact on the final interpretation of the study.

Neighbor-joining (NJ) and minimum-evolution analyses were also performed in MEGA.

Since species may share character values as a result of a common ancestry rather than independent evolution, regression analyses were performed using a phylogenetic generalized least-squares (PGLS) approach [ 45].

Microbiological (total mesophilic aerobic bacteria, aerobic spores, Bacillus cereus, and enterobacteria counts), physical (dispersion stability and particle size distribution), chemical (hydroperoxide index and volatile profile evolution) and sensory analyses were performed on soymilks.

Nucleotide alignments can be found in Additional file 5. Appropriate models of sequence evolution for ML analyses were determined using MODELTEST using Aikake's Information Criteria [ 99].

Neighbour-joining method, minimum evolution and UPMGA analyses were performed with the MEGA5 software package [ 44] using the uncorrected nucleotide differences (p-distance), which provides better results when examining a large number of sequences which contain a relatively small number of nucleotides [ 45].

Due to structural constraints on integrin proteins during evolution, phylogenetic analyses are likely to be complicated by homoplasy effects.