Sentence examples for evidence alignment from inspiring English sources

Furthermore, we compare our findings with putative correspondences from Bioportal (derived from LOOM software) and summarize the results in a total evidence alignment.

The existing computational approaches may be broadly classified into the following two categories [ 1]: The first approach is evidence alignment, which determines whether the region is transcribed and/or coded by exploiting a sufficient similarity between a genomic sequence region and protein sequences, ESTs, or RNA-Seq data [ 2].

All gene annotations and supporting evidence alignments produced using Maker along with protein domain signatures from InterProScan were loaded into a GBrowse genome browser available on the Bee Pests and Pathogens website (http://hymenopteragenome.org/beebase/?q=bee_pathogens).

After producing a pool of possible ab initio and "hint-based" gene predictions, MAKER chooses those that are best supported by EST and protein homology evidence alignments using internal quality control metrics [ 31, 59] and promotes them to the status of genome annotations.

Because MAKER uses evidence alignments to produce "hints" which are then sent to the ab initio gene prediction algorithms that can accept them, prediction algorithms that run inside the MAKER pipeline are capable of producing improved gene models even when the training parameters are imperfect.

The following resources are available at BeeBase [ 121], a division of the Hymenoptera Genome Database [ 88]: genome browsers with gene annotations and supporting evidence alignments; BLAST databases with the Amel_4.5 scaffold assembly, OGSv3.2, all input gene prediction sets and transcript contig assemblies; and a data download page with fasta sequence files and gff for annotations.

A recently published analysis by electron backscattered diffraction (EBSD) found no evidence for alignment of boundaries with slip planes or any other simple crystallographic plane, i.e. only macroscopic alignment.

These results provide evidence that alignment assessments may be helpful in risk screening for fifth metatarsal stress fractures.

There is partial evidence that alignment between IT strategic role and IST sourcing decisions results in better performance effects.

Twelve of 102 watersheds display evidence of alignment between fire and watershed orientation and we found no distinction in fire orientation as response to fire weather.

There was no evidence for alignment of the substructural boundaries with slip planes or any other simple crystallographic element, and it seems that the substructure is orientated primarily with respect to the macroscopic or mesoscopic straining state.