Sentence examples for events in an alignment from inspiring English sources

Tree length measures the total number of evolutionary events in an alignment.

We reiterated this up to three times per gene, generating up to three additional LGT events in a single alignment.

Additionally, since frameshifts are considered to be very rare events, their number in an alignment is restricted.

In order to find lineage specific indels, we defined an indel event as an alignment gap in one lineage that did not occur in the other two lineages, or correspondingly that one lineage lacked an alignment gap but a gap of the same length and start position was present in the two other lineages.

We chose this method because of its robustness and its ability to take advantage of information present in the form of insertion/deletion events in the alignment.

Whilst there was a tendency for Recco to report more and possibly spurious recombination events in the alignment containing repeats and gaps, we could confirm several recombination events with high confidence.

It is not known how the data inferred under these criteria work in conjunction with each of the respective inference methods to influence the accuracy of phylogenetic inference, when the gaps reflect indel events in the alignment.

IGV uses color and transparency to highlight interesting events in the alignment data and to visually deemphasize others in the coverage chart, at the read level and for individual bases.

Theoretically, inferred gaps in an alignment should represent past events of sequence insertions or deletions.

In an alignment of such genomes, historical recombination events define segments of the alignment with separate ancestral relationship.

Our division of Clade C into two major sections [Clades A (Lineages 4 7) and B (Lineages 8 10)] is also supported by the results of previous multi-gene analyses [ 16, 24], and by the presence of diagnostic indel events in the GHR alignment for several nodes (basal for Clade A; basal for Lineage 5), and we are confident as to the essential correctness of the topology.