Sentence examples for evaluation the alignment from inspiring English sources
In this evaluation, the alignment of a read is taken into account only if it has a percentage identity of ≥90% and contains ≥80% bases of the read.
About 2200 tracks were reconstructed in the VELO and they were used for the first evaluation of the alignment.
The most important reason is the lack of a gold standard to be the basis of an objective evaluation of the alignment qualities.
A qualitative evaluation of the alignment accuracy of the transformed images with the template was made before individual deformation fields were used to calculate volume changes.
Subsequent evaluation of the alignments was done with A LISCORE[ 82], which identifies ambiguously aligned regions in multiple sequence alignments.
In order to obtain a more refined evaluation of the alignments, we introduce (λ, K) parameters for estimating the score significance of alignment fragments inside which the reading frame difference is preserved.
We note that contact maps are aligned by optimizing the distance-dependent scoring function defined by Equations (3) and (4), which is different than the distance-independent IRACC measure used for evaluation of the alignments: the scoring function encodes the shortest distance between any two heavy atoms of contacting residues.
The first is a homology search where the six-frame translation of the input sequences are queried for known protein domains by hmmsearch (Fig. 1a), the second is an evaluation of the alignment-based predictions by three specialized RFs (Fig. 1c).
The last one arises from f-measure, a generally used evaluation metric of the alignment's quality, which may cause the bias improvement of the solution.
We will discuss the components in Figure 1 in the following sections: evaluation (Section 2.2), the alignment (Section 2.3), and the search methods (Section 2.4). Figure 1 Schematic representation of SHR.
In case at least one of the selection criteria for the evaluation of alignment characteristics (Table 2) is not satisfied, the 'Rehabilitation' is selected as best upgrading option.
