Exact(4)
The evaluation entries differed in using only Illumina (SOAP*) or Illumina plus Roche 454 (SOAP**) data.
More generally, we can look to see how correlated the ten key metrics are across all of the assemblies (including evaluation entries).
Excluding the evaluation entries, we observed that assemblies produced by the BCM-HGSC team achieved more 1st place rankings (five) than any other team.
Results from the small number of evaluation entries (3, 4 and 0 for bird, fish, and snake respectively) are mostly excluded from the Analyses sections below, but are referenced in the Discussion.
Similar(56)
Seven laryngeal signs were rated from recorded laryngeal images with no information on patient identity or time of evaluation (entry, post-1 month and post-2 months).
The BCM-HGSC team used all three types of sequence data in their competitive entry (BCM), but did not use the PacBio data in their evaluation entry (BCM*).
For their competitive assembly, PacBio data were used to fill scaffolding gaps (runs of Ns), but otherwise this assembly was generated in the same way as the evaluation entry.
However, if evaluation assemblies are included then the BCM-HGSC evaluation entry (BCM*) produces a notably higher sum z-score; the reasons for the differences between these two BCM-HGSC assemblies are discussed below (see 'The effects of combining different data types').
In the calculations for the parameter tuning and evaluations, entries of proteins similar to the query (≥30% sequence identity) were removed from the background knowledge dataset.
Each sequenced clone was analyzed using the BLAST program and classified as known, homologous, or novel after its evaluation against entries within the publicly accessible non-redundant NCBI database (Fig. 2).
The instrument is quick to disseminate and easy to score, making it a suitable instrument for health educators to employ to evaluate students' knowledge of EBP or in the evaluation of entry-level EBP training.
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