Sentence examples for evaluating the assembly from inspiring English sources

In evaluating the assembly quality of different assemblers, several criteria were used in choosing bench-mark data sets, assembly-pipelines and comparison metrics: e.g., statistical significance, ease of reproducibility, accessibility in public domain etc.

The use of the N50 length is most appropriate when assembling whole genomes but when evaluating the assembly of a transcriptome, in which the lengths of the genes are highly variable by default, a high N50 length does not necessarily indicate a higher quality transcriptome assembly.

We validated our unfiltered assembly and compared it against the new method by evaluating the assembly of spike-in transcripts.

Our choice was motivated by a similar threshold used by the authors of ABYSS [ 6] for evaluating the assembly accuracy for isolate genomes.

The IMNpRH2 panel allowed a highly accurate resolution of closely spaced markers and was very useful in evaluating the assembly of a clone contig.

The Sanger-sequenced small insert library was also used for evaluating the assembly quality of the WGSAS, comparing a number of sequences of the small insert library to contigs of the WGSAS.

In addition, we provide a series of reporting and genome assembly analysis tools for evaluating the assemblies.

Although the evaluation of the tradeoff between contig length and errors is an important problem, there is very little in the literature discussing this topic or applying it to evaluate the assembly quality of different assemblers.

To test the performance of SOAPdenovo2, we assembled the Assemblathon1 benchmark dataset [ 11] and evaluated the assembly using the Assemblathon1's official evaluation pipeline [ 1].

To evaluate the assembly, we generated additional whole genome sequence data with 1× coverage on the PacBio platform.

To evaluate the assembly of the pearl millet genome, we first calculated the length and N50 distribution for the BAC sequences.