The shape similarity measure used is the Gaussian shape Tanimoto depicted in Eq. 2. Alignment-recycling evaluates alignment-quality after each matrix multiplication through a single point shape Tanimoto computation.
In order to evaluate alignment accuracy of individual aligner, we calculated sensitivity, precision, and % of multimapped reads as indicator values for evaluation.
However, we could not make a judgment for capability and sensitivity of mapping aligners, since real-life data could not be employed to evaluate alignment accuracy.
[89], many other radiographic studies have been published in literature to evaluate alignment of the lower limbs, even in patient with posterolateral instability of the knee.
This study attempts to develop an alternative methodology to evaluate alignment of non-coplanar side edge notches in tensile loaded specimens in presence of global plastic strains.
The patient can walk earlier, weight-bearing X-rays can be obtained to evaluate alignment of the lower limbs, the mechanical axis can be corrected at any time during the elongation phase if needed without a second surgery being performed, and a tourniquet is not needed at time of surgery.
Sensitivity (or true positive rate) was used to evaluate alignment performance for BWA-SW and was calculated for query coverage and identity thresholds ranging from 90% to 100%.
We evaluated alignment statistics of individual gene, including length, percentage of exon, ratio of variable and parsimony informative characters, average within-group p-distance, and average base composition using MEGA4 [34] and Seqstate [35].
To refine this pharmacophore and evaluate alignment and the outcomes of the CoMFA and CoMSIA studies, we used the pseudoreceptor modeling software PrGen to generate a putative atomistic binding site model.
The following metrics are used to evaluate alignment accuracy.
We also evaluated alignment quality: the alignment sensitivity and precision of matrices and methods.
