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The performance of the model is evaluated using the proportion of the deleted edges that it correctly placed.
The marginal contribution by a single predictor in the univariate setting was evaluated using the proportion of variation explained in the outcome variable (PVE) [27].
The contribution of a signature predictor in the univariate setting was evaluated using the proportion of variation explained in the outcome variable (PVE) [ 42].
Assignment power of the SNP panel was evaluated using the proportion of successful identifications to the population of origin identified using GeneClass2.0 (Piry et al. 2004) and a subset of individuals (Anderson 2010).
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Agreement in baseline estimation was evaluated using the kappa statistic, the proportions of agreement and the intra-class correlation coefficient.
Agreement between SisPorto® 2.01 and the consensus of clinicians was evaluated using the kappa statistic, the proportions of agreement, the intra-class correlation coefficient, and the limits of agreement.
Differences were evaluated using the chi-square test for proportions and the independent-samples t-test for mean values.
Differences in proportions were evaluated using the Fisher exact test for nominal variables.
Differences in means where evaluated using T tests, differences in medians were evaluated using the Mann–Whitney U test and difference in proportions were analyzed using the chi-square test.
Trends in the proportion of cases in each neighbourhood type were evaluated using the Cochrane-Armitage Chi-square test.
Differences in means were evaluated using the two-tailed t test procedure, and differences in proportions were evaluated using Fisher's exact test.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com